miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25903980|gb|BU411309.1|BU411309 GACGCTGGGTGGTATACAGTATCTGCAGTCAACGGAGCAGGTGTGGCCACGTGCCACGCCAGACTGGAGGTTGCAACACA
TACAAACAAGCCAGTTCCAGCGCCAAAGCAGCTACGAGTCCGACCAACTTTCAGCAAGTATTTGGCCCTCAATGGCAGAG
GGCTGGATGTGAAACAAGCCTTCTCACCTGAGGGAGAGTTTCAGCGTTGGCTGAGCAGTCTGGACTGTATGAAAGCGATG
AACTTTAACTGGAAACAAAGAGGAAAACTCATACCAACGAGAGACAACGCCAACATAGCTGCAGTTAACTGGTGATAGTT
CTAATTAGCCAAATACCTATCTGTGTATTTTTACTGTGACTCTTGCACATTCTGCTGTTCCCATTTTACCACGTTAGATG
ATATTTCTATGGGTTGGTGAATATAACCATTTTCTGAGTATTGTATTTTAACGACAGAGGCTGAGCAGGCAGGCCGGTTA
GCGCTCACAGCGCGGGTGGTTTCGGCCCCACCTGTGCTGGGTTACATGCTGAGGTAGATGGGTTTGTACTGCTTCTCTAA
TACCGCTCTTGATGAGAACTCTGTACTGTCTGATACTAAAACCAAATAGAGTGTTTTTATGAGAATTAAGTAGAAGCAAA
TAAAACTTTAAACACCCCGAAAAA




Most similar to sp|Q9JIF9|MYOTI_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9JIF9|MYOTI_MOUSE Myotilin OS=Mus musculus GN=Myot PE=2 SV=1
          Length = 496

 Score =  115 bits (289), Expect(2) = 4e-27
 Identities = 55/69 (79%), Positives = 60/69 (86%)
 Frame = +1

Query: 1   DAGWYTVSAVNGAGVATCHARLEVATHTNKPVPAPKQLRVRPTFSKYLALNGRGLDVKQA 180
           DAGWYTVSAVN AGV TC+ RL+V     + +PAPKQLRVRPTFSKYLALNGRGLDVKQA
Sbjct: 415 DAGWYTVSAVNEAGVTTCNTRLDVTARPIQTLPAPKQLRVRPTFSKYLALNGRGLDVKQA 474

Query: 181 FSPEGEFQR 207
           F+PEGEFQR
Sbjct: 475 FNPEGEFQR 483



 Score = 26.6 bits (57), Expect(2) = 4e-27
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 192 GRVSALAEQSGLYESDEL 245
           G    LA QSGLYES+EL
Sbjct: 479 GEFQRLAAQSGLYESEEL 496


>sp|Q9UBF9|MYOTI_HUMAN Myotilin OS=Homo sapiens GN=MYOT PE=1 SV=2
          Length = 498

 Score =  116 bits (290), Expect = 1e-25
 Identities = 54/69 (78%), Positives = 61/69 (88%)
 Frame = +1

Query: 1   DAGWYTVSAVNGAGVATCHARLEVATHTNKPVPAPKQLRVRPTFSKYLALNGRGLDVKQA 180
           DAGWYTVSAVN AGV TC+ RL+V    N+ +PAPKQLRVRPTFSKYLALNG+GL+VKQA
Sbjct: 417 DAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLPAPKQLRVRPTFSKYLALNGKGLNVKQA 476

Query: 181 FSPEGEFQR 207
           F+PEGEFQR
Sbjct: 477 FNPEGEFQR 485